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PXD028040-1

PXD028040 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitlePatch-Clamp Proteomics of Single Neurons in Tissue Using Electrophysiology and Subcellular Capillary Electrophoresis Mass Spectrometry
DescriptionIn this project, we enabled mass spectrometry based proteomics characterization of single neurons in sections of the mouse brain. We accessed cells in a whole-cell patch clamp configuration and aspirated a portion of the neuronal soma into the patch clamp probe. The collected aspirate was expelled into a microvial, where proteins were extracted and processed for shot-gun analysis. The resulting trace amounts of protein digests were analyzed on a custom-built microanalytical capillary electrophoresis platform that was connected to an electrospray ionization high-resolution mass spectrometer. This “patch proteomics” technology identified ~150 proteins from triplicate measurement of single dopaminergic neurons in the mouse substantia nigra.
HostingRepositoryPRIDE
AnnounceDate2022-02-18
AnnouncementXMLSubmission_2022-02-18_15:30:12.856.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterPeter Nemes
SpeciesList scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationListTMT6plex-126 reporter+balance reagent acylated residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-08-19 21:59:45ID requested
12022-02-18 15:30:13announced
22023-11-14 08:53:27announced2023-11-14: Updated project metadata.
Publication List
10.1021/ACS.ANALCHEM.1C03826;
Keyword List
submitter keyword: electrophysiology, mass spectrometry, nervous system, bottom-up proteomics, capillary electrophoresis,Whole-cell patch-clamp, mouse
Contact List
Peter Nemes
contact affiliationDepartment of Chemistry & Biochemistry, University of Maryland, College Park, MD, USA
contact emailNemes@umd.edu
lab head
Peter Nemes
contact affiliationUniversity of Maryland, College Park
contact emailnemes@umd.edu
dataset submitter
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Dataset FTP location
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