PXD028025 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Protein metabolism drives feed efficiency in the liver and white muscle of efficient and inefficient Chinook salmon (Oncorhynchus tshawytscha) farmed in saline water |
Description | Understanding the molecular mechanisms of feed efficiency is an important step toward sustainability of salmonids aquaculture. In this study, the liver and white muscle proteomes of efficient (EFF) and inefficient (INEFF) Chinook salmon (Oncorhynchus tshawytscha) farmed in sea water were investigated by liquid chromatography-tandem mass spectrometry (LC-MS/MS) approach. In total, 2,746 liver and 702 white muscle quantified proteins were compared between 21 EFF and 22 INEFF fish. Protein synthesis was enriched in both liver and white muscle of the EFF group while conversely, pathways related to protein degradation (amino acid catabolism and proteolysis, respectively) were the most affected processes in the liver and white muscle of INEFF fish. The SOM in the INEFF group was significantly higher than EFF fish showing INEFF fish probably was the dominant group. The INEFF group (dominant) suffered stress and shifted to consume energy through protein catabolism. As the first study, the results provide a preliminary picture of the fundamental molecular landscape of feed efficiency in Chinook salmon farmed in sea water |
HostingRepository | PRIDE |
AnnounceDate | 2023-04-27 |
AnnouncementXML | Submission_2023-04-26_18:48:15.835.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | RichardWilson |
SpeciesList | scientific name: Oncorhynchus tshawytscha; NCBI TaxID: 74940; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-08-19 01:41:56 | ID requested | |
⏵ 1 | 2023-04-26 18:48:16 | announced | |
2 | 2023-11-14 08:45:16 | announced | 2023-11-14: Updated project metadata. |
Publication List
Esmaeili N, Carter CG, Wilson R, Walker SP, Miller MR, Bridle AR, Symonds JE, Protein metabolism in the liver and white muscle is associated with feed efficiency in Chinook salmon (Oncorhynchus tshawytscha) reared in seawater: Evidence from proteomic analysis. Comp Biochem Physiol Part D Genomics Proteomics, 42():100994(2022) [pubmed] |
Keyword List
submitter keyword: Chinook Salmon, Proteomics., Efficient Fish, Growth Performance, Feed Efficiency |
Contact List
Dr RichardWilson |
contact affiliation | Proteomics facility, Central Science Laboratory, University of Tasmania |
contact email | richard.wilson@utas.edu.au |
lab head | |
RichardWilson |
contact affiliation | University of Tasmania |
contact email | richard.wilson@utas.edu.au |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD028025
- Label: PRIDE project
- Name: Protein metabolism drives feed efficiency in the liver and white muscle of efficient and inefficient Chinook salmon (Oncorhynchus tshawytscha) farmed in saline water