PXD027789 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | pChem_benchmarking_dataset_lysinome_profiling |
Description | Data sets are used for benchmarking, pChem, a modification-centric, blind-search tool to provide a streamlined pipeline for unbiased assessing of the performance of chemoproteomic probes. Data were produced from the IPM-based QTRP (quantitative thiol reactivity profiling) applications in various species, incData sets are used for benchmarking, pChem, a modification-centric, blind-search tool to provide a streamlined pipeline for unbiased assessing of the performance of chemoproteomic probes. Data were produced from the lysinome profiling experiments using amine-reactive probes as indicated, including STP and NHS, both with a clickable alkyne handle. |
HostingRepository | PRIDE |
AnnounceDate | 2022-12-16 |
AnnouncementXML | Submission_2022-12-16_00:17:47.602.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | jixianghe |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-08-06 03:45:58 | ID requested | |
⏵ 1 | 2022-12-16 00:17:47 | announced | |
2 | 2023-11-14 08:52:39 | announced | 2023-11-14: Updated project metadata. |
Publication List
Keyword List
submitter keyword: STP NHS lysinome pChem |
Contact List
JingYang |
contact affiliation | State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences • Beijing, Beijing Institute of Lifeomics, Beijing, China |
contact email | yangjing@ncpsb.org.cn |
lab head | |
jixianghe |
contact affiliation | State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences • Beijing, Beijing Institute of Lifeomics, Beijing, China |
contact email | life_researcher@163.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/12/PXD027789 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD027789
- Label: PRIDE project
- Name: pChem_benchmarking_dataset_lysinome_profiling