PXD027764-2

PXD027764 is an original dataset announced via ProteomeXchange.

Title	pChem_benchmarking_dataset_redoxome
Description	Data sets are used for benchmarking, pChem, a modification-centric, blind-search tool to provide a streamlined pipeline for unbiased assessing of the performance of chemoproteomic probes. Data were produced from the redoxome profiling experiments using oxoform-specific probes as indicated, including SOH probes (DYn-2, BTD, WYneC/O/N) and SO2H probe (DiaAlk). All these probes contain a clickable alkyne handle.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_07:05:27.800.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jing Yang
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2021-08-05 10:02:17	ID requested
1	2023-02-27 06:33:54	announced
⏵ 2	2023-11-14 07:05:28	announced	2023-11-14: Updated project metadata.

He JX, Fei ZC, Fu L, Tian CP, He FC, Chi H, Yang J, A modification-centric assessment tool for the performance of chemoproteomic probes. Nat Chem Biol, 18(8):904-912(2022) [pubmed]

submitter keyword: Chemoproteomics, pChem, redoxome

Jing Yang
contact affiliation	State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences • Beijing, Beijing Institute of Lifeomics, Beijing, China
contact email	yangjing@ncpsb.org.cn
lab head
Jing Yang
contact affiliation	National Center for Protein Sciences, Beijing
contact email	yangjing54@hotmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/02/PXD027764

PRIDE project URI

• PRIDE
  1. PXD027764
     1. Label: PRIDE project
     2. Name: pChem_benchmarking_dataset_redoxome