PXD027713-1

PXD027713 is an original dataset announced via ProteomeXchange.

Title	Ancient proteins resolve controversy over the identity of Genyornis eggshell
Description	Here we show the potential of proteins preserved in Pleistocene eggshell for addressing a longstanding controversy in human and evolution: the identity of the extinct bird that laid the eggs which were exploited by Australia’s first inhabitants. The eggs had been originally attributed to the iconic extinct flightless Genyornis newtoni, and subsequently dated to before 50 ±5 ka by Miller et al. (2016). This was taken to represent the extinction date for this endemic megafaunal species and thus implied a role of humans in its demise. A contrasting hypothesis, according to which the eggshell was laid by a large megapode (mound-builder), would therefore acquit humans of their responsibility in the extinction of Genyornis. Ancient protein sequences were reconstructed and used to assess the evolutionary proximity of the undetermined eggshell to extant birds, rejecting the megapode hypothesis. Ancient DNA could not be retrieved from these highly degraded samples, but morphometric data supported the attribution of the eggshell to Genyornis. When used in triangulation to address well-defined hypotheses, palaeoproteomics is a precious tool for reconstructing the evolutionary history of extinct and extant species. Here we show that the identification of Genyornis eggshell implies a more nuanced understanding of the modes of interactions between humans and their environment.
HostingRepository	PRIDE
AnnounceDate	2022-07-19
AnnouncementXML	Submission_2022-07-18_23:54:01.766.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Beatrice Demarchi
SpeciesList	scientific name: Galloanserae; NCBI TaxID: 1549675;
ModificationList	iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2021-08-05 05:45:48	ID requested
⏵ 1	2022-07-18 23:54:02	announced
2	2023-11-14 08:53:09	announced	2023-11-14: Updated project metadata.

10.1073/PNAS.2109326119;

submitter keyword: Genyornis eggshell

Australia

palaeoproteomics

ancient DNA

megafaunal extinction

Beatrice Demarchi
contact affiliation	Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
contact email	beatrice.demarchi@unito.it
lab head
Beatrice Demarchi
contact affiliation	University of Turin
contact email	beatrice.demarchi@unito.it
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/07/PXD027713

PRIDE project URI

• PRIDE
  1. PXD027713
     1. Label: PRIDE project
     2. Name: Ancient proteins resolve controversy over the identity of Genyornis eggshell