PXD027317-1

PXD027317 is an original dataset announced via ProteomeXchange.

Title	comparative proteomic profile in duodenum sample of male slow-growing chicken
Description	Since the molecular mechanism underlying feed efficiency (FE) in slow-growing chickens is poorly understood. Thus, this study aimed to investigate the proteome differences and possible pathways associated with FE in male slow-growing chicken by using a label-free quantitative proteomic approach. At 10 weeks of ages duodenum samples from six animals (three high-FE and three low-FE chickens) were collected for differential abundant proteins (DAPs), protein networks, functional enrichment and pathway analysis. In this study, we found 40 DAPs significantly associated with FE pathways included glycolysis/gluconeogenesis, peroxisome, oxidative phosphorylation, tight junction, and cysteine and methionine metabolism. Thus, the differences of protein driving those pathways affected the FE potential of slow-growing chicken might be interesting candidate biomarkers for genomic selection of animals with a higher efficient feed utilization.
HostingRepository	PRIDE
AnnounceDate	2022-05-20
AnnouncementXML	Submission_2022-05-20_02:17:59.047.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Pramin Kaewsatuan
SpeciesList	scientific name: Gallus gallus (Chicken); NCBI TaxID: 9031;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2021-07-14 22:09:34	ID requested
⏵ 1	2022-05-20 02:17:59	announced

Kaewsatuan P, Poompramun C, Kubota S, Yongsawatdigul J, Molee W, Uimari P, Molee A, Comparative proteomics revealed duodenal metabolic function associated with feed efficiency in slow-growing chicken. Poult Sci, 101(6):101824(2022) [pubmed]

submitter keyword: Label-free LC-MSMS, feed efficiency, slow-growing chicken, duodenum

Amonrat molee
contact affiliation	head of center of Excellence on Technology and iInnovation for Korat Chicken Business Development
contact email	amonrat@sut.ac.th
lab head
Pramin Kaewsatuan
contact affiliation	animal breeding
contact email	d5930029@g.sut.ac.th
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/05/PXD027317

PRIDE project URI

• PRIDE
  1. PXD027317
     1. Label: PRIDE project
     2. Name: comparative proteomic profile in duodenum sample of male slow-growing chicken