PXD027297-1

PXD027297 is an original dataset announced via ProteomeXchange.

Title	Proteome-Level Functional Redundancy in the Human Gut Microbiome
Description	Here, we quantify the proteome-level functional redundancy in the human gut microbiome using metaproteomics and network approaches.In particular, we used an ultra-deep metaproteomics approach based on high-pH reverse phase fractionation. The data analysis revealed high protein-level functional redundancy and high nestedness in proteomic content networks - bipartite graphs that connect taxa with their expressed functions.
HostingRepository	PRIDE
AnnounceDate	2023-06-08
AnnouncementXML	Submission_2023-06-08_03:14:11.500.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	LeyuanLi
SpeciesList	scientific name: human gut metagenome; NCBI TaxID: 408170;
ModificationList	acetylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Exploris 480

Revision	Datetime	Status	ChangeLog Entry
0	2021-07-14 07:15:09	ID requested
⏵ 1	2023-06-08 03:14:11	announced
2	2023-11-14 09:01:05	announced	2023-11-14: Updated project metadata.

submitter keyword: gut microbiome, network, functional redundancy, metaproteomics

DanielFigeys
contact affiliation	Faculty of Medicine, University of Ottawa
contact email	dfigeys@uottawa.ca
lab head
LeyuanLi
contact affiliation	National Center for Protein Sciences, Beijing
contact email	lileyuan2016@gmail.com
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD027297
     1. Label: PRIDE project
     2. Name: Proteome-Level Functional Redundancy in the Human Gut Microbiome