PXD026932 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | reductive debromination of polybrominated diphenyl ethers by Dehalococcoides |
Description | Extensive use of polybrominated diphenyl ethers (PBDEs) has resulted in widespread environmental distribution and concerns remain about risks to human health and ecosystems from legacy PBDE contamination. Though bioremediation has been proven to be a cost-effective and efficient technology for treating halogenated pollutants in situ, application of bioremediation technologies at PBDE-contaminated sites is restricted by a lack of knowledge about functional PBDE-dehalogenating microbes. In the current study, we observed distinct PBDE-dehalogenation activity by three previously isolated Dehalococcoides mccartyi strains (CG1, CG4, and 11a5). PBDE debromination proceeded via distinct pathways in each D. mccartyi strain and involved previously characterized (TceA11a5, PcbA1, and PcbA4) and uncharacterized (11a5_e001) reductive dehalogenases (RDase), suggesting that this phenotype may be more widespread among the Dehalococcoides than is currently recognized. |
HostingRepository | PRIDE |
AnnounceDate | 2022-05-26 |
AnnouncementXML | Submission_2022-05-25_18:39:57.197.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Siyan Zhao |
SpeciesList | scientific name: Dehalococcoides mccartyi CG1; NCBI TaxID: 1432059; scientific name: Dehalococcoides mccartyi; NCBI TaxID: 61435; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-06-25 03:55:02 | ID requested | |
⏵ 1 | 2022-05-25 18:39:57 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: reductive dehalogenation, polybrominated diphenyl ethers, Dehalococcoides |
Contact List
He Jianzhong |
contact affiliation | Department of Civil and Environmental Engineering, National University of Singapore |
contact email | jianzhong.he@nus.edu.sg |
lab head | |
Siyan Zhao |
contact affiliation | National University of Singapore |
contact email | siyan.zhao@outlook.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/05/PXD026932 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD026932
- Label: PRIDE project
- Name: reductive debromination of polybrominated diphenyl ethers by Dehalococcoides