PXD026815 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | SARS_CoV-2 substrate profiling in interferon-treated BEAS-2B cell proteomes |
Description | To profile the human substrate degradome of the SARS-CoV-2 main viral protease and to investigate whether 3CLpro cleavage of cellular substrates dampens host antiviral responses induced by type I interferons, we treated BEAS-2B cells with interferon-alpha (N = 3), interferon-beta (N = 3), or vehicle (N = 3), retrieve and exposed native proteome extracts from human embryonic kidney to 3CLpro cleavage. Then, N Terminal Amine Labeling of Substates (TAILS) was used to identify the substrates. Here, heavy [+34] isotope dimethyl labeling is performed at the whole protein level in the 3CLpro-exposed samples, and the P1' side of substrates substrates was revealed by comparing to the samples exposed to inactive mutant labeled with ligh [+28 Da] dimethyl. |
HostingRepository | PRIDE |
AnnounceDate | 2021-11-03 |
AnnouncementXML | Submission_2021-11-03_05:54:57.579.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD026815 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Yoan Machado |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | N-ethylmaleimide derivatized cysteine; 2-pyrrolidone-5-carboxylic acid (Gln); acetylated residue; monohydroxylated residue |
Instrument | maXis |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-06-20 22:39:43 | ID requested | |
⏵ 1 | 2021-11-03 05:54:57 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
ProteomeXchange project tag: Sars-cov-2, Covid-19 |
submitter keyword: SARS-CoV-2, TAILS, 3CLpro, Interferon, lung, Bruker Q-TOF, Byonic |
Contact List
Christopher M. Overall |
contact affiliation | Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3. |
contact email | chris.overall@ubc.ca |
lab head | |
Yoan Machado |
contact affiliation | University of British Columbia |
contact email | yoan.machado@ubc.ca |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
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[ - ]
- PRIDE
- PXD026815
- Label: PRIDE project
- Name: SARS_CoV-2 substrate profiling in interferon-treated BEAS-2B cell proteomes