<<< Full experiment listing

PXD026763-1

PXD026763 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleHuman MDA-MB-231 breast cancer cells overexpressing miR-183-5p and its isomiRs
DescriptionOverexpression of miR-183-5p|+2, but not of the other two isomiRs |0 and |+1, was observed to reduce cell cycle and cell proliferation in different triple-negative breast cancer cell lines. Therefore, we hypothesized that the |+2 isoform has targets distinct from the other two isoforms. To test this hypothesis, we overexpressed separately the three different isoforms or negative controls (siAllstar or mimic-Cltr) and performed Mass Spectrometry to identify differentially regulated proteins. Interestingly, a gene set enrichment analysis of the changes in protein expression revealed significant downregulation of transcriptional targets of E2F specifically in cells transfected with the |+2 isoform prompting us to validate the predicted isomiR specific target E2F1. Subsequently, we could show that direct targeting of E2F1 by miR-183-5p|+2 is responsible for the impact of the isomiR on cell cycle and proliferation.
HostingRepositoryPRIDE
AnnounceDate2022-05-27
AnnouncementXMLSubmission_2022-05-26_16:05:54.425.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterCindy Körner
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListNo PTMs are included in the dataset
InstrumentQ Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-06-17 21:36:13ID requested
12022-05-26 16:05:54announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Human, breast cancer, MDA-MB-231, miRNA, miR-183-5p
Contact List
Stefan Wiemann
contact affiliationMolecular Genome Analysis, German Cancer Research Centre, Heidelberg, Germany
contact emails.wiemann@dkfz.de
lab head
Cindy Körner
contact affiliationGerman Cancer Research Center, Heidelberg Molecular Genome Analysis (B050)
contact emailc.koerner@dkfz-heidelberg.de
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/05/PXD026763
PRIDE project URI
Repository Record List
[ + ]