PXD026763 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Human MDA-MB-231 breast cancer cells overexpressing miR-183-5p and its isomiRs |
Description | Overexpression of miR-183-5p|+2, but not of the other two isomiRs |0 and |+1, was observed to reduce cell cycle and cell proliferation in different triple-negative breast cancer cell lines. Therefore, we hypothesized that the |+2 isoform has targets distinct from the other two isoforms. To test this hypothesis, we overexpressed separately the three different isoforms or negative controls (siAllstar or mimic-Cltr) and performed Mass Spectrometry to identify differentially regulated proteins. Interestingly, a gene set enrichment analysis of the changes in protein expression revealed significant downregulation of transcriptional targets of E2F specifically in cells transfected with the |+2 isoform prompting us to validate the predicted isomiR specific target E2F1. Subsequently, we could show that direct targeting of E2F1 by miR-183-5p|+2 is responsible for the impact of the isomiR on cell cycle and proliferation. |
HostingRepository | PRIDE |
AnnounceDate | 2022-05-27 |
AnnouncementXML | Submission_2022-05-26_16:05:54.425.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Cindy Körner |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-06-17 21:36:13 | ID requested | |
⏵ 1 | 2022-05-26 16:05:54 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Human, breast cancer, MDA-MB-231, miRNA, miR-183-5p |
Contact List
Stefan Wiemann |
contact affiliation | Molecular Genome Analysis, German Cancer Research Centre, Heidelberg, Germany |
contact email | s.wiemann@dkfz.de |
lab head | |
Cindy Körner |
contact affiliation | German Cancer Research Center, Heidelberg Molecular Genome Analysis (B050) |
contact email | c.koerner@dkfz-heidelberg.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/05/PXD026763 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD026763
- Label: PRIDE project
- Name: Human MDA-MB-231 breast cancer cells overexpressing miR-183-5p and its isomiRs