PXD025997 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Genome-wide identification and characterization of small peptides in maize |
Description | Small peptides (sPeptides), a class of biological molecules of less than 100 amio acids encoded by small open reading frames (sORFs), play important roles in multiple biological process. Here, we conducted a comprehensive study using mRNA-seq, Ribo-seq, and Mass Spectrometry (MS) on six tissues (each with at least two replicates) of maize, set up a bioinformatic pipeline, and performed a genome-wide scan of sORFs and sPeptides in maize. Our study sets up a guildline for the genome-wide scan of sORFs and sPeptides in plants by integrating Ribo-seq, and MS data, provides a more comprehensive resource of functional sPeptides in maize, and sheds light on the complex biological system of plants in a new perspective. |
HostingRepository | PRIDE |
AnnounceDate | 2021-05-30 |
AnnouncementXML | Submission_2021-05-30_02:20:28.843.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Wanchao Zhu |
SpeciesList | scientific name: Zea mays (Maize); NCBI TaxID: 4577; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-05-13 03:30:19 | ID requested | |
⏵ 1 | 2021-05-30 02:20:29 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Maize |
Small open reading frame (sORF) |
Small Peptide (sPeptide) |
Ribo-seq |
Mass spectrometry (MS) |
Contact List
Lin Li |
contact affiliation | Huazhong Agricultural University |
contact email | hzaulilin@mail.hzau.edu.cn |
lab head | |
Wanchao Zhu |
contact affiliation | Huazhong Agriculture University |
contact email | qfdwxzwc@163.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD025997
- Label: PRIDE project
- Name: Genome-wide identification and characterization of small peptides in maize