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PXD025934-1

PXD025934 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleDetecting mistranslation in yeast expressing tRNA variants
DescriptionMistranslation, the mis-incorporation of an amino acid not specified by the “standard” genetic code, occurs in all cells. tRNA variants that increase mistranslation arise spontaneously and engineered tRNAs can achieve mistranslation frequencies approaching 10% in yeast and bacteria. The goal of this study was to detect mistranslation from two different tRNA variants. The first variant, tRNA-Pro-G3:U70, has a mutation in its acceptor stem creating a G3:U70 base pair which is the key identity element for the alanine tRNA synthetase. This tRNA should be charged with alanine and mis-incorporate alanine at proline codons. The second variant, tRNA-Ser-UCU,G26A, is a serine tRNA with an arginine anticodon and a G26A secondary mutation to dampen function and prevent lethal levels of mistranslation. This tRNA should mis-incorporate serine at arginine codons.
HostingRepositoryPRIDE
AnnounceDate2021-05-17
AnnouncementXMLSubmission_2021-05-16_22:58:35.957.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMatthew Berg
SpeciesList scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationListacetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
InstrumentOrbitrap Exploris 480
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-05-11 02:39:23ID requested
12021-05-16 22:58:36announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Mistranslation, tRNA variants, yeast, LC-MSMS
Contact List
Dr. Judit Villen
contact affiliationDepartment of Genome Science, University of Washington, USA
contact emailjvillen@uw.edu
lab head
Matthew Berg
contact affiliationDepartment of Genome Sciences, University of Washington
contact emailmattberg@uw.edu
dataset submitter
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Dataset FTP location
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