PXD025592 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Integrated physiological and comparative proteomics analysis of contrasting genotypes of pearl millet reveals underlying salt-responsive mechanisms |
Description | Salinity stress poses a significant risk to agricultural yield and productivity. Therefore, elucidation of plant salt-response mechanisms has become essential to identify stress-tolerance genes. In the present study, two pearl millet genotypes with contrasting salt-tolerance showed differential morpho-physiological and proteomic responses under 150 mM NaCl, and the genotype IC 325825 could withstand salt-stress better than IP 17224. The salt-tolerance potential of IC 325825 was associated with its ability to maintain ionic, osmotic balance and membrane integrity under stress. The IC 325825 exhibited better growth under salinity as compared to IP 17224 due to higher expression of C4 photosynthesis enzymes, efficient antioxidant system, and lower Na+/K+ ratio. Comparative proteomics analysis revealed greater metabolic perturbation in IP 17224 under salinity, in contrast to IC 325825 that harbored pro-active stress-responsive machinery, allowing its survival and better adaptability under salt-stress. The differentially expressed proteins were in-silico characterized for their functions, subcellular-localization, pathway/ interaction analysis, and relative transcript levels. This study has provided novel insights into salinity stress adaptive mechanisms in pearl millet, demonstrating the power of proteomics-based approaches. The critical proteins identified in the present study could be further explored as potential objects for increasing salt-tolerance in sensitive crop plants. |
HostingRepository | PRIDE |
AnnounceDate | 2022-05-09 |
AnnouncementXML | Submission_2022-05-16_05:43:28.635.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Shweta Jha |
SpeciesList | scientific name: Cenchrus americanus; NCBI TaxID: 4543; |
ModificationList | monohydroxylated residue; deaminated residue; iodoacetamide derivatized residue |
Instrument | ultraflex |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-04-23 06:20:40 | ID requested | |
1 | 2022-05-09 03:52:51 | announced | |
⏵ 2 | 2022-05-16 05:43:29 | announced | 2022-05-16: Updated publication reference for PubMed record(s): 34837239. |
Publication List
Jha S, Maity S, Singh J, Chouhan C, Tak N, Ambatipudi K, Integrated physiological and comparative proteomics analysis of contrasting genotypes of pearl millet reveals underlying salt-responsive mechanisms. Physiol Plant, 174(1):e13605(2022) [pubmed] |
Keyword List
submitter keyword: comparative proteomics |
contrasting genotype |
differential protein expression |
pearl millet |
salinity tolerance |
stress signaling |
Contact List
Shweta Jha |
contact affiliation | Plant Functional Genomics Lab, Biotechnology Unit, Department of Botany (UGC-Centre of Advance Study), Jai Narain Vyas University, Jodhpur, 342001, India |
contact email | jha.shweta80@gmail.com |
lab head | |
Shweta Jha |
contact affiliation | Department of Botany (UGC- Centre of Advance Study), J.N.V. University-New Campus, Jodhpur (Raj.)- 342001 |
contact email | Jha.shweta80@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD025592
- Label: PRIDE project
- Name: Integrated physiological and comparative proteomics analysis of contrasting genotypes of pearl millet reveals underlying salt-responsive mechanisms