PXD025586 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteome analysis of Renibacterium salmoninarum reveals putative role of membrane vesicles in virulence |
Description | This study used subcellular fractionation combined with proteomics for a comprehensive overview of the protein localizations of R. salmoninarum proteins within enriched subcellular fractions of cytosolic, membrane, extracellular and membrane vesicle (MV) proteins. With this approach, 1,674 protein groups were label-free quantified and the abundance of proteins involved in virulence processes were compared between the subcellular fractions. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_08:52:21.232.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Tobias Kroniger |
SpeciesList | scientific name: Renibacterium salmoninarum ATCC 33209; NCBI TaxID: 288705; |
ModificationList | acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-04-23 06:20:08 | ID requested | |
1 | 2022-02-24 04:29:25 | announced | |
⏵ 2 | 2023-11-14 08:52:21 | announced | 2023-11-14: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Microbiology, Membrane vesicles,Proteomics, Mass spectrometry, Renibacterium salmoninarum |
Contact List
Dörte Becher |
contact affiliation | Institute of Microbiology, Department of Microbial Proteomics, Center for Functional Genomics of Microbes, University of Greifswald, 17489 Greifswald, Germany |
contact email | dbecher@uni-greifswald.de |
lab head | |
Tobias Kroniger |
contact affiliation | Institute of Microbiology, Department of Microbial Proteomics, Center for Functional Genomics of Microbes, University of Greifswald |
contact email | kronigert@uni-greifswald.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD025586 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD025586
- Label: PRIDE project
- Name: Proteome analysis of Renibacterium salmoninarum reveals putative role of membrane vesicles in virulence