PXD025505-1

PXD025505 is an original dataset announced via ProteomeXchange.

Title	Synergistic effect of short- and long-read sequencing on functional meta-omics
Description	Evaluation of short-read-only, long-read-only, and hybrid assembly approaches on metagenomic samples demonstrating how they affect gene and protein prediction which is relevant for downstream functional analyses. For a human gut microbiome sample, we use complementary metatranscriptomic, and metaproteomic data to evaluate the metagenomic-based protein predictions.
HostingRepository	PRIDE
AnnounceDate	2022-02-17
AnnouncementXML	Submission_2022-02-17_00:47:51.863.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD025505
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Benoit Kunath
SpeciesList	scientific name: human gut metagenome; NCBI TaxID: 408170;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2021-04-20 23:04:45	ID requested
⏵ 1	2022-02-17 00:47:52	announced

Galata V, Busi SB, Kunath BJ, de Nies L, Calusinska M, Halder R, May P, Wilmes P, Laczny CC, Functional meta-omics provide critical insights into long- and short-read assemblies. Brief Bioinform, 22(6):(2021) [pubmed]

submitter keyword: metaproteomics, functional omics, long-reads, gdb_metap

Paul Wilmes
contact affiliation	Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg
contact email	paul.wilmes@uni.lu
lab head
Benoit Kunath
contact affiliation	LCSB
contact email	benoit.kunath@uni.lu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD025505

PRIDE project URI

• PRIDE
  1. PXD025505
     1. Label: PRIDE project
     2. Name: Synergistic effect of short- and long-read sequencing on functional meta-omics