PXD025158-1
PXD025158 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Mapping microproteins and ncRNA-encoded polypeptides in different mouse tissues |
Description | Small open reading frame encoded peptides (SEPs), also called microproteins, play a vital role in biological processes. Plenty of their open reading frames are located on the non-coding RNA (ncRNA) range. Recent research has demonstrated that ncRNA-encoded polypeptides have essential functions and exist ubiquitously in various tissues. To better understand the role of microproteins and ncRNA-encoded polypeptide expression in different tissues, we profiled the proteomic characterization of five mouse tissues by mass spectrometry, including bottom-up, top-down, and de novo sequencing strategies. Bottom-up and top-down with database-dependent searches identified 791 microproteins in the OpenProt database. De novo sequencing obtained 309 microproteins and ten ncRNA-encoded polypeptides that were not in the SEP database. In this study, we discovered 1100 microproteins in total, including 208 ncRNA-encoded polypeptides. From the annotation of these microproteins, we found that the brain contains the largest number of neuropeptides, while the spleen contains the most immunoassociated microproteins. |
HostingRepository | iProX |
AnnounceDate | 2021-04-03 |
AnnouncementXML | Submission_2021-04-05_05:15:27.969.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Ni Pan |
SpeciesList | scientific name: Mus musculus; NCBI TaxID: 10090; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive Plus |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2021-04-05 05:14:47 | ID requested | |
⏵ 1 | 2021-04-05 05:15:28 | announced | |
2 | 2023-02-09 20:07:13 | announced | 2023-02-10: Update publication information. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Small open reading frame, microprotein, ncRNAs, tissue, polypeptides, |
Contact List
Cuihong Wan | |
---|---|
contact affiliation | Central China Normal University |
contact email | ch_wan@mail.ccnu.edu.cn |
lab head | |
Ni Pan | |
contact affiliation | Central China Normal University |
contact email | 15071457583@163.com |
dataset submitter |
Full Dataset Link List
iProX dataset URI |