PXD024815 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | MS1-only data acquisition of human gut microbiome data treated with 5 drugs at different concentrations. |
Description | We tested the ability of MS1-only data to identify the effects of drugs at varying concentrations on a human gut microbiome. We processed a human stool sample and cultured the processed microbiome in vitro under anaerobic condition for 48 hours using the rapidAIM assay. The microbiome was treated with either azathioprine, ciprofolxacin, diclofenac, nicatidine, paracetamol or control DMSO. Each drug was used at three different concentrations |
HostingRepository | PRIDE |
AnnounceDate | 2022-07-29 |
AnnouncementXML | Submission_2022-07-29_11:48:56.582.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Caitlin Simopoulos |
SpeciesList | scientific name: human gut metagenome; NCBI TaxID: 408170; |
ModificationList | acetylated residue; monohydroxylated residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-03-18 01:00:46 | ID requested | |
⏵ 1 | 2022-07-29 11:48:56 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: MS1-only, human gut microbiome |
Contact List
Daniel Figeys |
contact affiliation | BMI, Faculty of Medicine, University of Ottawa |
contact email | dfigeys@uottawa.ca |
lab head | |
Caitlin Simopoulos |
contact affiliation | University of Ottawa |
contact email | csimopou@uottawa.ca |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD024815
- Label: PRIDE project
- Name: MS1-only data acquisition of human gut microbiome data treated with 5 drugs at different concentrations.