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PXD024139-1

PXD024139 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleIntensity-based absolute quantification (iBAQ) of proteins in MDA-MB231
DescriptionTo determine the absolute copy number of proteins in MDA-MB231 breast cancer cells, we employed IBAQ mediated absolute quantification of proteins based on (Schwanhäusser et al., Nature, 2011), with some modifications. Maqquant calculated iBAQ values were calibrated using spike-in standards, and used to calculate copy numbers for each identified protein within the dataset. Copy numbers for a total of 3,584 proteins were calculated in MDA-MB231 cells.
HostingRepositoryPRIDE
AnnounceDate2021-05-14
AnnouncementXMLSubmission_2021-05-14_06:32:39.372.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterFaraz Mardakheh
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListNo PTMs are included in the dataset
InstrumentQ Exactive Plus
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-02-11 07:59:23ID requested
12021-05-14 06:32:39announced
22021-05-16 22:10:36announced2021-05-17: Updated publication reference for PubMed record(s): 33986153.
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: iBAQ
absolute protein quantification
breast cancer
MDA-MB231;
Contact List
Faraz K. Mardakheh
contact affiliationCentre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ UK.
contact emailf.mardakheh@qmul.ac.uk
lab head
Faraz Mardakheh
contact affiliationBarts Cancer Institute
contact emailf.mardakheh@qmul.ac.uk
dataset submitter
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Dataset FTP location
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PRIDE project URI
Repository Record List
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