PXD023491-2

PXD023491 is an original dataset announced via ProteomeXchange.

Title	A long-term 3D organoid (tubuloid) model of the adult mouse kidney
Description	The aim of the project was the analysis of the bulk proteome and phosphoproteome in 3D organoids (tubuloids) from the adult mouse kidney. Proteome (nearly 9000 proteins) and phosphoproteome (nearly 16000 phospho sites) were compared in three biological (independent) replicates of epithelial organoids (early passage and long-term, 3-month cultures) and freshly isolated, MAC-sorted, Epcam-positive kidney epithelial cells. After collection of the organoids, Matrigel was removed using a non-enzymatic solution.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:31:33.665.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Oliver Popp
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	phosphorylated residue
Instrument	Q Exactive HF-X

Revision	Datetime	Status	ChangeLog Entry
0	2021-01-08 07:40:08	ID requested
1	2024-02-26 01:56:50	announced
⏵ 2	2024-10-22 06:31:34	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: proteomics,organoids

Walter Birchmeier
contact affiliation	Signal Transduction in Development and Cancer Cancer Research Program Max Delbrueck Center for Molecular Medicine (MDC) in the Helmholtz Association Berlin, Germany
contact email	wbirch@mdc-berlin.de
lab head
Oliver Popp
contact affiliation	MDC Berlin
contact email	oliver.popp@mdc-berlin.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/02/PXD023491

PRIDE project URI

• PRIDE
  1. PXD023491
     1. Label: PRIDE project
     2. Name: A long-term 3D organoid (tubuloid) model of the adult mouse kidney