PXD023247-1

PXD023247 is an original dataset announced via ProteomeXchange.

Title	Responses to different sulfur sources reveal the complicated and interlinked sulfur metabolism pathways of a deep-sea sulfate reducing bacterium
Description	Sulfur metabolism in the deep-sea cold seep has been mentioned to have an important contribution to the biogeochemical cycle of sulfur in previous studies. And sulfate reducing bacteria have also been considered to be a dominant microbial population in the deep-sea cold seep and play a crucial role in this process. However, most of sulfate reducing bacteria from cold seep still cannot be purely cultured under laboratory conditions, therefore the actual sulfur metabolism pathways in sulfate reducing bacteria from the deep-sea cold seep have remained unclear. Here, we isolate and pure culture a typical sulfate reducing bacterium Desulfovibrio marinus CS1 from the sediment sample of the deep-sea cold seep in the South China Sea, which provides a probability to understand the sulfur metabolism in the cold seep.
HostingRepository	PRIDE
AnnounceDate	2024-06-16
AnnouncementXML	Submission_2024-06-15_22:55:23.501.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Rui Liu
SpeciesList	scientific name: Desulfovibrio marinus; NCBI TaxID: 370038;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive Plus

Revision	Datetime	Status	ChangeLog Entry
0	2020-12-21 02:44:04	ID requested
⏵ 1	2024-06-15 22:55:24	announced
2	2024-10-22 06:45:03	announced	2024-10-22: Updated project metadata.

10.1002/mlf2.12038;

Liu R, Shan Y, Xi S, Zhang X, Sun C, A deep-sea sulfate-reducing bacterium generates zero-valent sulfur via metabolizing thiosulfate. mLife, 1(3):257-271(2022) [pubmed]

submitter keyword: sulfur, proteomics, in situ,sulfate reducing bacterium, cold seep

Rui liu
contact affiliation	Institute of Oceanology, Chinese Academy of Sciences
contact email	liurui@qdio.ac.cn
lab head
Rui Liu
contact affiliation	Institute of Oceanology, Chinese Academy of Sciences
contact email	liurui@qdio.ac.cn
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/06/PXD023247

PRIDE project URI

• PRIDE
  1. PXD023247
     1. Label: PRIDE project
     2. Name: Responses to different sulfur sources reveal the complicated and interlinked sulfur metabolism pathways of a deep-sea sulfate reducing bacterium