PXD022020-1

PXD022020 is an original dataset announced via ProteomeXchange.

Title	MHC-I peptidome analysis of human cancer cell lines
Description	In this study, we sought to identify naturally presented MHC peptides in 8 human cancer cell lines: PANC.1, A.375, SW527, CaSki, PC.3, LNCaP_clone_FGC, MCF.7, and VMRC.LCD. Peptides identified were 8-15 amino acid long with the majority between 8 to 11 amino acids which match known properties of MHC-I presented peptides. Number of identifications differs between cell lines and ranges between 1834-5425 peptides.
HostingRepository	PRIDE
AnnounceDate	2022-02-16
AnnouncementXML	Submission_2022-02-16_08:20:53.277.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Dora Warshaviak
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2020-10-16 01:25:28	ID requested
⏵ 1	2022-02-16 08:20:54	announced

Martin AD, Wang X, Sandberg ML, Negri KR, Wu ML, Toledo Warshaviak D, Gabrelow GB, McElvain ME, Lee B, Daris ME, Xu H, Kamb A, Re-examination of MAGE-A3 as a T-cell Therapeutic Target. J Immunother, 44(3):95-105(2021) [pubmed]

submitter keyword: HLA-I, LC-MS/MS

Alexander Kamb
contact affiliation	A2 Biotherapeutics
contact email	akamb@a2biotherapeutics.com
lab head
Dora Warshaviak
contact affiliation	A2 Biotherapeutics
contact email	dwarshaviak@a2biotherapeutics.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD022020

PRIDE project URI

• PRIDE
  1. PXD022020
     1. Label: PRIDE project
     2. Name: MHC-I peptidome analysis of human cancer cell lines