PXD020896 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Metaproteomic analysis of viral concentrates reveals vertical shift of viral community and microbial metabolism in the ocean |
| Description | Viral concentrates (VCs) contained both viral particles and cell-affiliated components. In this study, a shotgun metaproteomic approach was applied to characterize proteins in the VCs collected from chlorophyll maximum, mesopelagic (200 m) and bathypelagic (3000 m) waters in the South China Sea. Abundant viral proteins indicated the shift of viral community as depth. Whereas the remaining non-viral proteins suggested the diverse microbial metabolism distinct at different layers. |
| HostingRepository | PRIDE |
| AnnounceDate | 2022-01-19 |
| AnnouncementXML | Submission_2022-01-18_19:33:09.545.xml |
| DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD020896 |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | He Yanbin |
| SpeciesList | scientific name: marine sediment bacterium ISA-3146; NCBI TaxID: 424020; |
| ModificationList | No PTMs are included in the dataset |
| Instrument | Q Exactive |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2020-08-13 04:42:01 | ID requested | |
| ⏵ 1 | 2022-01-18 19:33:09 | announced | |
Publication List
| Dataset with its publication pending |
Keyword List
| submitter keyword: Metaproteomics, viral concentrate, virus, microbial metabolism |
Contact List
| Dazhi Wang |
|---|
| contact affiliation | Professor of College of the Environment and Ecology |
| contact email | dzwang@xmu.edu.cn |
| lab head | |
| He Yanbin |
|---|
| contact affiliation | BGI |
| contact email | yanbinhe0911@163.com |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/01/PXD020896 |
| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD020896
- Label: PRIDE project
- Name: Metaproteomic analysis of viral concentrates reveals vertical shift of viral community and microbial metabolism in the ocean
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