PXD020025 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Grad-Seq analysis of a photosynthetic bacterium rich in internal membrane systems |
Description | Here we analyzed the full ensemble of cellular RNAs and co-fractionating proteins using gradient profiling by sequencing (Grad-seq) in Synechocystis 6803, a cyanobacterium rich in internal membrane systems. |
HostingRepository | PRIDE |
AnnounceDate | 2022-02-15 |
AnnouncementXML | Submission_2022-02-15_13:19:18.822.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Philipp Spaet |
SpeciesList | scientific name: Synechocystis sp. PCC 6803; NCBI TaxID: 1148; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-06-25 18:28:52 | ID requested | |
⏵ 1 | 2022-02-15 13:19:19 | announced | |
Publication List
Riediger M, Sp, ä, t P, Bilger R, Voigt K, Ma, č, ek B, Hess WR, Analysis of a photosynthetic cyanobacterium rich in internal membrane systems via gradient profiling by sequencing (Grad-seq). Plant Cell, 33(2):248-269(2021) [pubmed] |
Keyword List
submitter keyword: cyanobacteria, post-transcriptional regulation, ribonucleoprotein complexes, RNA-binding proteins, small regulatory RNAs |
Contact List
Wolfgang R Hess |
contact affiliation | Genetics and Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Schänzlestr. 1, 79104 Freiburg, Germany |
contact email | wolfgang.hess@biologie.uni-freiburg.de |
lab head | |
Philipp Spaet |
contact affiliation | University Tuebingen Department of Quantitative Proteomics |
contact email | philipp.spaet@uni-tuebingen.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD020025 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD020025
- Label: PRIDE project
- Name: Grad-Seq analysis of a photosynthetic bacterium rich in internal membrane systems