PXD019915-2

PXD019915 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer
Description	To identify aberrant splicing isoforms and potential neoantigens, we performed full-length cDNA sequencing of lung adenocarcinoma cell lines using a long-read sequencer MinION. We constructed a comprehensive catalog of aberrant splicing isoforms and detected isoform-specific peptides using proteome analysis.
HostingRepository	jPOST
AnnounceDate	2020-12-09
AnnouncementXML	Submission_2021-02-04_16:42:07.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD019915
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Yutaka Suzuki
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-06-19 23:29:21	ID requested
1	2020-12-08 21:21:31	announced
⏵ 2	2021-02-04 16:42:08	announced	2021-02-04: Updated FTP location.
3	2022-09-18 02:16:54	announced	2022-09-18: Updated FTP location.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: MinION, lung cancer, splicing isoform, neoantigen

submitter keyword: MinION, lung cancer, splicing isoform, neoantigen

Contact List

Yutaka Suzuki
lab head
Yutaka Suzuki
contact affiliation	Suzuki Lab , Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.biosciencedbc.jp/archive/jpostrepos/JPST000874

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.biosciencedbc.jp/archive/jpostrepos/JPST000874