PXD019645-3

PXD019645 is an original dataset announced via ProteomeXchange.

Title	Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing
Description	As the SARS-CoV-2 pandemic continues to spread, thousands of scientists around the globe have changed research direction to understand better how the virus works and to find out how it may be tackled. To facilitate proteomic research on SARS-CoV-2, we presents deep-scale proteomes of common cell line models (Calu-3, Caco-2, ACE2 transfected A549 and Vero E6) and monitors changes of the proteome upon viral infection in Vero E6 cells. We provide high quality proteome expression data that can be used to refine the annotation of protein coding regions of the Vero E6 cell line genome. Further, we generated spectral libraries that can be used DIA cell line experiments or PRM assays of SARS-CoV-2 proteins.
HostingRepository	PRIDE
AnnounceDate	2023-05-15
AnnouncementXML	Submission_2023-05-15_02:20:49.180.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Chien-YunLee
SpeciesList	scientific name: Cercopithecus aethiops (Green monkey) (Grivet); NCBI TaxID: 9534; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Chlorocebus sabaeus; NCBI TaxID: 60711;
ModificationList	mono N-acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2020-06-08 04:54:13	ID requested
1	2020-06-28 23:18:01	announced
2	2020-06-30 04:05:46	announced	2020-06-30: Updated publication reference for PubMed record(s): 32591346. 2020-06-30: Updated publication reference for DOI(s): 10.1074/mcp.RA120.002164.
⏵ 3	2023-05-15 02:20:50	announced	2023-05-15: Updated project metadata.
4	2024-10-22 05:09:05	announced	2024-10-22: Updated project metadata.

Zecha J, Lee CY, Bayer FP, Meng C, Grass V, Zerweck J, Schnatbaum K, Michler T, Pichlmair A, Ludwig C, Kuster B, Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing. Mol Cell Proteomics, 19(9):1503-1522(2020) [pubmed]

ProteomeXchange project tag: Sars-cov-2, Covid-19, EPIC-XS

submitter keyword: SARS-CoV-2, Vero E6, stable isotope labeling, clinical proteomics, parallel reaction monitoring, infectome, COVID-19, ACE2

BernhardKuster
contact affiliation	Chair of Proteomics and Bioanalytics, Technical University of Munich, Germany
contact email	kuster@tum.de
lab head
Chien-YunLee
contact affiliation	Chair of Proteomics and Bioanalytics, Technical University of Munich, Germany
contact email	chienyun.lee@tum.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/07/PXD019645

PRIDE project URI

• PRIDE
  1. PXD019645
     1. Label: PRIDE project
     2. Name: Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing