PXD019330 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Reshaping of the Arabidopsis thaliana proteome landscape and co-regulation of proteins in development and immunity |
Description | Proteome remodeling is a fundamental adaptive response and proteins in complex and functionally related proteins are often co-expressed. Using a deep sampling strategy we define Arabidopsis thaliana tissue core proteomes at around 10,000 proteins per tissue and absolutely quantify (copy numbers per cell) nearly 16,000 proteins throughout the plant lifecycle. A proteome wide survey of global post translational modification revealed amino acid exchanges pointing to potential conservation of translational infidelity in eukaryotes. Correlation analysis of protein abundance uncovered potentially new tissue and age specific roles of entire signaling modules regulating transcription in photosynthesis, seed development and senescence and abscission. In addition to the shotgun proteomics data we provide targeted proteomics PRM data in PXD021753. The extensive coverage of the Arabidopsis proteome in various biological scenarios presents a rich resource to plant biologists that we make available to the community. |
HostingRepository | PRIDE |
AnnounceDate | 2020-10-02 |
AnnouncementXML | Submission_2020-10-02_00:55:27.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Steffen Neumann |
SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-05-21 17:50:43 | ID requested | |
⏵ 1 | 2020-10-02 00:55:27 | announced | |
2 | 2020-10-19 00:42:05 | announced | 2020-10-19: Updated publication reference for PubMed record(s): 33007468. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Arabidopsis, deep proteomics, protein co-expression. proteome, senescence, ribosome, seed proteome, photosynthesis, plant immunity, jasmonate |
Contact List
Wolfgang Hoehenwarter |
contact affiliation | Leibniz Institute of Plant Biochemistry Research Group Head Proteome Biology of Plant Interactions |
contact email | Wolfgang.Hoehenwarter@ipb-halle.de |
lab head | |
Steffen Neumann |
contact affiliation | IPB Halle |
contact email | sneumann@ipb-halle.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/10/PXD019330 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD019330
- Label: PRIDE project
- Name: Reshaping of the Arabidopsis thaliana proteome landscape and co-regulation of proteins in development and immunity