PXD018895 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Benchmarking of different methods for obtaining high quality secretomics data |
Description | The main drawback of secretome analyses are contaminating proteins derived from culture medium or proteins released from dying cells which are hard to distinguish from proteins actively secreted by cells. Therefore, several approaches have been applied allowing to remove contamination from secretome analysis. Here, we will compare these approaches and will evaluate their potential to determine proteins secreted by unconventional secretory pathways. |
HostingRepository | PRIDE |
AnnounceDate | 2020-10-19 |
AnnouncementXML | Submission_2020-10-19_00:39:54.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Gereon Poschmann |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-04-29 03:32:55 | ID requested | |
⏵ 1 | 2020-10-19 00:39:55 | announced | |
Publication List
Poschmann G, Brenig K, Lenz T, St, ü, hler K, Comparative Secretomics Gives Access to High Confident Secretome Data: Evaluation of Different Methods for the Determination of Bona Fide Secreted Proteins. Proteomics, 21(2):e2000178(2021) [pubmed] |
Keyword List
submitter keyword: secreteome, secretomics, conditioned medium, supernatant, benchmarking |
Contact List
Gereon Poschmann |
contact affiliation | Proteome Research (AG Stühler) Heinrich Heine University Düsseldorf Universitätsstraße 1 40225 Düsseldorf |
contact email | gereon.poschmann@hhu.de |
lab head | |
Gereon Poschmann |
contact affiliation | Molecular Proteomics Laboratory |
contact email | gereon.poschmann@hhu.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/10/PXD018895 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD018895
- Label: PRIDE project
- Name: Benchmarking of different methods for obtaining high quality secretomics data