PXD018883-1

PXD018883 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	ECM of proliferative vs dormant HNSCC
Description	The goal of this project is to characterize the ECM composition of actively proliferative and dormant head and neck squamous cell carcinoma xenografts and identify components of the ECM niche instructing tumor cell dormancy.
HostingRepository	PRIDE
AnnounceDate	2024-10-07
AnnouncementXML	Submission_2024-10-07_13:33:41.703.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD018883
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	George Chlipala
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Deamidated; Oxidation; Carbamidomethyl; iodoacetamide derivatized residue; Gln->pyro-Glu
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-04-28 22:02:02	ID requested
⏵ 1	2024-10-07 13:33:42	announced

Publication List

Di Martino JS, Nobre AR, Mondal C, Taha I, Farias EF, Fertig EJ, Naba A, Aguirre-Ghiso JA, Bravo-Cordero JJ, A tumor-derived type III collagen-rich ECM niche regulates tumor cell dormancy. Nat Cancer, 3(1):90-107(2022) [pubmed]
10.1038/s43018-021-00291-9;
10.6019/PXD018883;

Di Martino JS, Nobre AR, Mondal C, Taha I, Farias EF, Fertig EJ, Naba A, Aguirre-Ghiso JA, Bravo-Cordero JJ, A tumor-derived type III collagen-rich ECM niche regulates tumor cell dormancy. Nat Cancer, 3(1):90-107(2022) [pubmed]

10.1038/s43018-021-00291-9;

10.6019/PXD018883;

Keyword List

submitter keyword: tumor dormacy, xenografts, Head and neck squamous cell carcinoma,Extracellular matrix, tumor microenvironment

submitter keyword: tumor dormacy, xenografts, Head and neck squamous cell carcinoma,Extracellular matrix, tumor microenvironment

Contact List

Alexandra Naba
contact affiliation	Department of Physiology and Biophysics, University of Illinois at Chicago
contact email	anaba@uic.edu
lab head
George Chlipala
contact affiliation	University of Illinois at Chicago
contact email	gchlip2@uic.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD018883
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD018883

PRIDE project URI

Repository Record List

[ + ]