PXD018862-2

PXD018862 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Building spectral libraries to analyze phosphopeptides in colorectal cancer organoids
Description	The goal of this project was to build SWATH Spectral libraries to analyze phosphopeptides from colorectal cancer organoids.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:17:06.905.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Peter Blattmann
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	phosphorylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-04-28 08:25:43	ID requested
1	2023-12-10 15:13:59	announced
⏵ 2	2024-10-22 06:17:07	announced	2024-10-22: Updated project metadata.

Publication List

10.1016/j.isci.2023.108399;
Plattner C, Lamberti G, Blattmann P, Kirchmair A, Rieder D, Loncova Z, Sturm G, Scheidl S, Ijsselsteijn M, Fotakis G, Noureen A, Lisandrelli R, B, ö, ck N, Nemati N, Krogsdam A, Daum S, Finotello F, Somarakis A, Sch, ä, fer A, Wilflingseder D, Gonzalez Acera M, Ö, fner D, Huber LA, Clevers H, Becker C, Farin HF, Greten FR, Aebersold R, de Miranda NFCC, Trajanoski Z, Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer. iScience, 26(12):108399(2023) [pubmed]

10.1016/j.isci.2023.108399;

Plattner C, Lamberti G, Blattmann P, Kirchmair A, Rieder D, Loncova Z, Sturm G, Scheidl S, Ijsselsteijn M, Fotakis G, Noureen A, Lisandrelli R, B, ö, ck N, Nemati N, Krogsdam A, Daum S, Finotello F, Somarakis A, Sch, ä, fer A, Wilflingseder D, Gonzalez Acera M, Ö, fner D, Huber LA, Clevers H, Becker C, Farin HF, Greten FR, Aebersold R, de Miranda NFCC, Trajanoski Z, Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer. iScience, 26(12):108399(2023) [pubmed]

Keyword List

submitter keyword: organoids,Colorectal cancer

submitter keyword: organoids,Colorectal cancer

Contact List

Ruedi Aebersold
contact affiliation	1) Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland 2) Faculty of Science, University of Zurich, Zurich, Switzerland
contact email	aebersold@imsb.biol.ethz.ch
lab head
Peter Blattmann
contact affiliation	Idorsia Pharmaceuticals Ltd
contact email	blattmann@imsb.biol.ethz.ch
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/12/PXD018862
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/12/PXD018862

PRIDE project URI

Repository Record List

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