PXD018771-2

PXD018771 is an original dataset announced via ProteomeXchange.

Title	Proteome-wide cross-linking mass spectrometry of human K562 cells
Description	Proteome-wide cross-linking mass spectrometry was performed on human K562 cell lysates. MS2-MS3 fragmentation strategy was used to aquire the XL-MS data. The raw files in this dataset are a subset of PXD013928.
HostingRepository	PRIDE
AnnounceDate	2020-07-01
AnnouncementXML	Submission_2020-10-12_06:51:19.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Kumar Yugandhar
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2020-04-24 01:17:59	ID requested
1	2020-07-01 06:43:02	announced
⏵ 2	2020-10-12 06:51:20	announced	2020-10-12: Updated publication reference for PubMed record(s): 32994567.
3	2024-10-22 05:08:26	announced	2024-10-22: Updated project metadata.

Yugandhar K, Wang TY, Wierbowski SD, Shayhidin EE, Yu H, Structure-based validation can drastically underestimate error rate in proteome-wide cross-linking mass spectrometry studies. Nat Methods, 17(10):985-988(2020) [pubmed]

submitter keyword: Human, cross-linking mass spectrometry, proteome-wide, protein-protein, interaction

Haiyuan Yu
contact affiliation	Cornell University, USA
contact email	haiyuan.yu@cornell.edu
lab head
Kumar Yugandhar
contact affiliation	Cornell University
contact email	kk665@cornell.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/07/PXD018771

PRIDE project URI

• PRIDE
  1. PXD018771
     1. Label: PRIDE project
     2. Name: Proteome-wide cross-linking mass spectrometry of human K562 cells