PXD018715-2

PXD018715 is an original dataset announced via ProteomeXchange.

Title	Identification of the SS18-SSX interacting proteins
Description	Using affinity purification determine changes in SS18 BAF complex upon fusion to SSX1. Using soluble nuclear fraction (nuclear extract NE) and nuclease digested chromatin fraction (CHR) we performed affinity capture of proteins bound to wild type SS18 and synovial sarcoma SS18-SSX1 fusion from NE and CHR of 293T cells.
HostingRepository	PRIDE
AnnounceDate	2020-08-08
AnnouncementXML	Submission_2020-08-11_02:39:39.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD018715
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Andrew D'Avino
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Methyl; Oxidation; Carbamidomethyl
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2020-04-21 08:46:21	ID requested
1	2020-08-08 15:22:07	announced
⏵ 2	2020-08-11 02:39:40	announced	2020-08-11: Updated publication reference for PubMed record(s): 32747783.

McBride MJ, Mashtalir N, Winter EB, Dao HT, Filipovski M, D'Avino AR, Seo HS, Umbreit NT, St Pierre R, Valencia AM, Qian K, Zullow HJ, Jaffe JD, Dhe-Paganon S, Muir TW, Kadoch C, The nucleosome acidic patch and H2A ubiquitination underlie mSWI/SNF recruitment in synovial sarcoma. Nat Struct Mol Biol, 27(9):836-845(2020) [pubmed]

submitter keyword: BAF complex, synovial sarcoma, nuclear extract, chromatin, histones, 293T cells

Cigall Kadoch
contact affiliation	Dana Farber Cancer Institute
contact email	Cigall_Kadoch@dfci.harvard.edu
lab head
Andrew D'Avino
contact affiliation	Broad Institute of MIT and Harvard
contact email	davino@broadinstitute.org
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/08/PXD018715

PRIDE project URI

• PRIDE
  1. PXD018715
     1. Label: PRIDE project
     2. Name: Identification of the SS18-SSX interacting proteins