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PXD018715 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleIdentification of the SS18-SSX interacting proteins
DescriptionUsing affinity purification determine changes in SS18 BAF complex upon fusion to SSX1. Using soluble nuclear fraction (nuclear extract NE) and nuclease digested chromatin fraction (CHR) we performed affinity capture of proteins bound to wild type SS18 and synovial sarcoma SS18-SSX1 fusion from NE and CHR of 293T cells.
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterAndrew D'Avino
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListMethyl; Oxidation; Carbamidomethyl
InstrumentLTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02020-04-21 08:46:21ID requested
12020-08-08 15:22:07announced
22020-08-11 02:39:40announced2020-08-11: Updated publication reference for PubMed record(s): 32747783.
Publication List
McBride MJ, Mashtalir N, Winter EB, Dao HT, Filipovski M, D'Avino AR, Seo HS, Umbreit NT, St Pierre R, Valencia AM, Qian K, Zullow HJ, Jaffe JD, Dhe-Paganon S, Muir TW, Kadoch C, The nucleosome acidic patch and H2A ubiquitination underlie mSWI/SNF recruitment in synovial sarcoma. Nat Struct Mol Biol, 27(9):836-845(2020) [pubmed]
Keyword List
submitter keyword: BAF complex, synovial sarcoma, nuclear extract, chromatin, histones, 293T cells
Contact List
Cigall Kadoch
contact affiliationDana Farber Cancer Institute
contact emailCigall_Kadoch@dfci.harvard.edu
lab head
Andrew D'Avino
contact affiliationBroad Institute of MIT and Harvard
contact emaildavino@broadinstitute.org
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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