PXD018610 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Data-dependent and independent acquisition of Salmonella in epithelial cells throughout the infection process |
Description | Viewing the scarce amount of protein material coming from the bacterial pathogen in infection models and despite the availability of contemporary, highly sensitive and fast scanning mass spectrometers, the power requirement still not suffices to study the host and pathogen proteomes simultaneously. In the present work we aimed to establish a DIA mass spectrometry workflow for improving the protein identification and quantification of LC-MS/MS, in Salmonella infected epithelial cells, therefore enabling simultaneous host and pathogen protein expression profiling at different time post infection. |
HostingRepository | PRIDE |
AnnounceDate | 2023-07-29 |
AnnouncementXML | Submission_2023-07-29_01:40:25.933.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | UrsulaFels |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-04-16 23:00:39 | ID requested | |
⏵ 1 | 2023-07-29 01:40:26 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: HeLa cells, data-dependent acquisition (DDA),Proteomics, Salmonella, data-independent acquisition (DIA), LC-MS/MS |
Contact List
Petra VanDamme |
contact affiliation | 1Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium |
contact email | Petra.VanDamme@ugent.be |
lab head | |
UrsulaFels |
contact affiliation | UGent |
contact email | ursulafels@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/07/PXD018610 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD018610
- Label: PRIDE project
- Name: Data-dependent and independent acquisition of Salmonella in epithelial cells throughout the infection process