PXD018391 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Multiomics study to elucidate the biodegradation of copolyester film by a marine microbial enrichment culture |
Description | Although the biodegradation of biodegradable plastics in soil and compost is well-studied, there is little knowledge on the metabolic mechanisms of synthetic polymers degradation by marine microorganisms. Here, we present a multiomics study to elucidate the biodegradation mechanism of a commercial aromatic-aliphatic copolyester film by a marine microbial enrichment culture. The plastic film and each monomer can be used as sole carbon source. Our analysis showed that the consortium synergistically degrades the polymer, different degradation steps being performed by different members of the community. Analysis of gene expression and translation profiles revealed that the relevant degradation processes in the marine consortium are closely related to poly(ethylene terephthalate) biodegradation from terrestrial microbes. Although there are multiple genes and organisms with the potential to perform a degradation step, only a few of these are active during biodegradation. Our results elucidate the potential of marine microorganisms to mineralize biodegradable plastic polymers and describe the mechanisms of labor division within the community to get maximum energetic yield from a complex synthetic substrate. |
HostingRepository | PRIDE |
AnnounceDate | 2020-09-25 |
AnnouncementXML | Submission_2020-09-24_22:23:38.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Nico Jehmlich |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-04-06 01:22:31 | ID requested | |
⏵ 1 | 2020-09-24 22:23:38 | announced | |
2 | 2024-10-22 05:12:43 | announced | 2024-10-22: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Biodegradable plastics, Metaproteomics, Meta-omics, Marine biodegradation, LC-MS |
Contact List
Nico Jehmlich |
contact affiliation | Helmholtz Centre for Environmental Research GmbH - UFDZDepartment of Molecular Systems Biology Permoserstraße 15 04318 Leipzig, Germany |
contact email | nico.jehmlich@ufz.de |
lab head | |
Nico Jehmlich |
contact affiliation | Helmholtz-Centre for Environmental Research - UFZ |
contact email | nico.jehmlich@ufz.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD018391
- Label: PRIDE project
- Name: Multiomics study to elucidate the biodegradation of copolyester film by a marine microbial enrichment culture