PXD017618-1

PXD017618 is an original dataset announced via ProteomeXchange.

Title	ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessment
Description	Here we present a high-performance software for proteome analysis that combines different mass spectrometric approaches, such as, top-down for intact protein analyses and both bottom-up and middle-down, for proteolytic fragment characterization.
HostingRepository	PRIDE
AnnounceDate	2020-11-02
AnnouncementXML	Submission_2020-11-01_22:43:23.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Diogo Borges Lima
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos; Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2020-02-19 07:38:18	ID requested
⏵ 1	2020-11-01 22:43:24	announced
2	2024-10-22 05:14:29	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: Bottom-up, top-down, bioinformatics

Julia Chamot-Rooke
contact affiliation	Mass Spectrometry for Biology Unit, Institut Pasteur, CNRS USR 2000, Paris, France
contact email	julia.chamot-rooke@pasteur.fr
lab head
Diogo Borges Lima
contact affiliation	CeMM - Research Center for Molecular Medicine of the Austrian Academy of Sciences
contact email	diogobor@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/11/PXD017618

PRIDE project URI

• PRIDE
  1. PXD017618
     1. Label: PRIDE project
     2. Name: ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessment