PXD017367-1
PXD017367 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Soybean under smoke and flooding |
| Description | Soybean is an important crop with abundant protein, vegetable oil, and several phytochemicals. Meanwhile, plant-derived smoke plays a key role in plant growth. To investigate the effect of plant-derived smoke on the growth of soybean, a gel-free/label-free proteomic technique was used. The length of root including hypocotyl increased in soybean treated with 2000 ppm plant-derived smoke within 4 days. On treatment with plant-derived smoke, ribosome-related proteins increased and proteasome-related proteins decreased in roots including hypocotyl. Because arginase increased and arginosuccinate synthase/glutamine synthase decreased, the relationship between plant-derived smoke and arginine metabolism was confirmed. Metabolites related to amino acids, carboxylic acids, and sugars were mostly altered with the treatment of smoke. Amino acids related to lipid synthesis and protein phosphorylation increased; while those related to arginine metabolism intensively changed in smoke-treated soybean. In addition, nitric oxide significantly increased as well. On the other hand, under flooding stress, plant-derived smoke induced sacrifice-for-survival-mechanism-driven degradation of root tip in soybean, which promoted lateral root development during soybean recovery after flooding. These results suggest that plant-derived smoke improves early stage of growth in soybean with the balance of arginine synthesis/degradation and regulates soybean tolerance towards flooding. |
| HostingRepository | jPOST |
| AnnounceDate | 2021-02-04 |
| AnnouncementXML | Submission_2021-02-03_07:00:05.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Setsuko Komatsu |
| SpeciesList | scientific name: cellular organisms; NCBI TaxID: 131567; |
| ModificationList | S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide |
| Instrument | LTQ Orbitrap |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2020-02-03 21:23:00 | ID requested | |
| ⏵ 1 | 2021-02-03 07:00:05 | announced | |
| 2 | 2021-02-08 22:47:07 | announced | 2021-02-08: Updated FTP location. |
| 3 | 2022-09-18 04:03:45 | announced | 2022-09-18: Updated FTP location. |
Publication List
| Dataset with its publication pending |
Keyword List
| submitter keyword: soybean, smoke, flooding |
Contact List
| Setsuko Komatsu | |
|---|---|
| lab head | |
| Setsuko Komatsu | |
| contact affiliation | Fukui University of Technology |
| dataset submitter | |
Full Dataset Link List
| jPOST dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://jpost.pharm.kyoto-u.ac.jp/repository/JPST000743 |
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