PXD017240-1

PXD017240 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomics data of mouse skeletal muscles (hypergravity exposure)
Description	This project is “Medical proteome analysis of osteoporosis- and bone mass-related proteins using the Kibo Japanese Experiment Module of International Space Station (ISS)”. Applying proteomic technologies, this research aims to identify proteins involved in space flight-induced osteopenia as well as osteoporosis occurring on the ground by searching serum, bone and skeletal muscle (soleus, extensor digitorum longus) proteomes. The goal of this study is to get better understanding to protect the health of both astronauts and osteoporosis patients. Proteome analyses of skeletal muscles from 10 male C57BL/6J mouse (1-g gravity and 3-g gravity [n=5, respectively]) were carried out tryptic digestion followed by LC-MS/MS analysis (DDA). The obtained results were searched against UniProt DB by Mascot, and the identified peptides were filtered at 1% FDR threshold by searching against the randomized decoy DB.
HostingRepository	jPOST
AnnounceDate	2020-02-20
AnnouncementXML	Submission_2020-02-19_18:50:32.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Yayoi Kimura
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	unknown modification; L-methionine sulfoxide; S-carboxamidomethyl-L-cysteine; S-carbamoyl-L-cysteine; N6-carbamoyl-L-lysine; alpha-aminocarbamoylated residue
Instrument	LTQ Orbitrap Elite

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-01-21 20:37:30	ID requested
⏵ 1	2020-02-19 18:50:33	announced
2	2021-02-04 16:46:49	announced	2021-02-04: Updated FTP location.
3	2022-09-18 03:31:38	announced	2022-09-18: Updated FTP location.

Publication List

Ohira T, Ino Y, Nakai Y, Morita H, Kimura A, Kurata Y, Kagawa H, Kimura M, Egashira K, Moriya S, Hiramatsu K, Kawakita M, Kimura Y, Hirano H, Proteomic analysis revealed different responses to hypergravity of soleus and extensor digitorum longus muscles in mice. J Proteomics, 217():103686(2020) [pubmed]

Ohira T, Ino Y, Nakai Y, Morita H, Kimura A, Kurata Y, Kagawa H, Kimura M, Egashira K, Moriya S, Hiramatsu K, Kawakita M, Kimura Y, Hirano H, Proteomic analysis revealed different responses to hypergravity of soleus and extensor digitorum longus muscles in mice. J Proteomics, 217():103686(2020) [pubmed]

Keyword List

submitter keyword: Mouse, Skeletal muscle, Soleus, Extensor digitorum longus, Hypergravity exposure, Kibo project, Medical Proteomics

submitter keyword: Mouse, Skeletal muscle, Soleus, Extensor digitorum longus, Hypergravity exposure, Kibo project, Medical Proteomics

Contact List

Hisashi Hirano
lab head
Yayoi Kimura
contact affiliation	Yokohama City University
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://jpost.pharm.kyoto-u.ac.jp/repository/JPST000736

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://jpost.pharm.kyoto-u.ac.jp/repository/JPST000736