PXD016861-1

PXD016861 is an original dataset announced via ProteomeXchange.

Title	Role of Specialized Composition of SWI/SNF Complexes in Prostate Cancer Lineage Plasticity
Description	Advanced prostate cancer initially responds to hormonal treatment, but ultimately becomes resistant and requires more potent therapies. One mechanism of resistance seen in 10% of these patients is through lineage plasticity, which manifests in a partial or complete small cell or neuroendocrine prostate cancer (NEPC) phenotype. Here, we investigate the role of the mammalian SWI/SNF chromatin remodeling complex in NEPC. Using large patient datasets, patient-derived organoids and cancer cell lines, we identify SWI/SNF subunits that are deregulated in NEPC, demonstrate that SMARCA4 (BRG1) overexpression is associated with aggressive disease and that SMARCA4 depletion impairs prostate cancer cell growth. We also show that SWI/SNF complexes interact with different lineage-specific factors in prostate adenocarcinoma and in NEPC cells, and that induction of lineage plasticity through depletion of REST is accompanied by changes in SWI/SNF genome occupancy. These data suggest a specific role for mSWI/SNF complexes in therapy-related lineage plasticity, which may be relevant for other solid tumors.
HostingRepository	PRIDE
AnnounceDate	2020-11-04
AnnouncementXML	Submission_2020-11-04_02:20:43.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Manfred Heller
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2019-12-20 02:25:33	ID requested
⏵ 1	2020-11-04 02:20:43	announced
2	2024-10-22 05:14:37	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: Prostate cancer, lineage plasticity, SWI/SNF complex, epigenetic

Mark A. Rubin
contact affiliation	Departement for Biomedical Research University of Bern Switzerland
contact email	mark.rubin@dbmr.unibe.ch
lab head
Manfred Heller
contact affiliation	Proteomics and Mass Spectrometry Core Facility, Department for BioMedical Research (DBMR), University of Bern, Bern, Switzerland
contact email	pmscf@dbmr.unibe.ch
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/11/PXD016861

PRIDE project URI

• PRIDE
  1. PXD016861
     1. Label: PRIDE project
     2. Name: Role of Specialized Composition of SWI/SNF Complexes in Prostate Cancer Lineage Plasticity