PXD016801-1

PXD016801 is an original dataset announced via ProteomeXchange.

Title	Microbial metaproteome data from decayed beech dead wood
Description	Wood-decomposition in terrestrial ecosystems is a very important process with huge ecologic consequences. This decomposition process is a combination of biological respiration, leaching and fragmentation, mainly triggered by organismic activities. In order to gain a deeper insight into these microbial communities and their role in deadwood decay, we used metaproteomics. Metaproteomics is an important tool and offers the ability to characterize the protein complement of environmental microbiota at a given point in time. In this dataset, we provide data of an exemplary beech wood log and applied different extraction methods to provide the proteome profile of beech dead wood and their corresponding fungal-bacterial community.
HostingRepository	PRIDE
AnnounceDate	2020-05-27
AnnouncementXML	Submission_2020-05-26_16:10:51.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Nico Jehmlich
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-12-17 05:45:06	ID requested
⏵ 1	2020-05-26 16:10:52	announced
2	2024-10-22 05:05:49	announced	2024-10-22: Updated project metadata.

Kipping L, Holzscheck N, Maurer F, Muszynski S, Noll M, Jehmlich N, Microbial metaproteome data from decayed beech dead wood. Data Brief, 29():105285(2020) [pubmed]

curator keyword: Metaproteomics, Biological

submitter keyword: Dead wood decay, metaproteomics, protein extraction, fungal-bacterial community

Nico Jehmlich
contact affiliation	Dr. Nico Jehmlich Group leader Microbiome Biology Molecular Systems Biology Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 4767 nico.jehmlich@ufz.de, www.ufz.de
contact email	nico.jehmlich@ufz.de
lab head
Nico Jehmlich
contact affiliation	Helmholtz-Centre for Environmental Research - UFZ
contact email	nico.jehmlich@ufz.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD016801

PRIDE project URI

• PRIDE
  1. PXD016801
     1. Label: PRIDE project
     2. Name: Microbial metaproteome data from decayed beech dead wood