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PXD016702-1

PXD016702 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSeamount sheath water: years-long retention of deep-ocean water traced by bacterioplankton
DescriptionSeamounts, often rising hundreds of metres above the surrounding seafloor, obstruct the flow of deep-ocean water. While the resultant entrainment of deep-water by seamounts is predicted from ocean circulation models, its empirical validation has been hampered by the large scale and slow rate of the interaction. To overcome these limitations we use the growth of planktonic bacteria to assess the interaction rate. The selected study site, Tropic Seamount, in the North-Eastern Atlantic represents the majority of isolated seamounts, which do not affect the surface ocean waters. We prove deep-water is entrained by the seamount by measuring 2.3 times higher bacterial concentrations in the seamount-associated or ‘sheath’ water than in deep-ocean water unaffected by seamounts. Genomic analyses of the dominant sheath-water bacteria confirm their planktonic origin, whilst proteomic analyses indicate their slow growth. According to our radiotracer experiments, the doubling time of sheath-water bacterioplankton is 1.5 years. Therefore, for bacterioplankton concentration to reach 2.3 times higher in the ambient seawater, the seamount would need to retain deep-ocean water for more than 3.5 years. We propose that turbulent mixing of the retained sheath-water could stimulate bacterioplankton growth by increasing the cell encounter rate with the ambient dissolved organic molecules. If some of these molecules chelate hydroxides of iron and manganese, bacterioplankton consumption of the organic chelators would result in precipitation of insoluble hydroxides. Hence precipitated hydroxides would form ferromanganese deposits as a result of the bacterioplankton-mediated deep-water seamount interaction.
HostingRepositoryPRIDE
AnnounceDate2020-05-27
AnnouncementXMLSubmission_2020-05-26_17:11:51.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMinia Antelo
SpeciesList scientific name: unidentified marine bacterioplankton; NCBI TaxID: 13136;
ModificationList6x(13)C labeled L-lysine; monohydroxylated residue
InstrumentLTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02019-12-11 05:55:10ID requested
12020-05-26 17:11:52announced
22024-10-22 05:06:10announced2024-10-22: Updated project metadata.
Publication List
Giljan G, Kamennaya NA, Otto A, Becher D, Ellrott A, Meyer V, Murton BJ, Fuchs BM, Amann RI, Zubkov MV, Bacterioplankton reveal years-long retention of Atlantic deep-ocean water by the Tropic Seamount. Sci Rep, 10(1):4715(2020) [pubmed]
Keyword List
curator keyword: Biological
submitter keyword: Seamount bacterioplankton
ferromanganese encrusted guyot
isotope-tracer bioassay
in situ incubator
flow cytometry
flow sorted cell proteomics
next generation sequencing
Contact List
Dörte Becher
contact affiliationInstitut für Mikrobiologie Universität Greifswald Felix Hausdorff Str.8 17489 Greifswald Tel.: (+49) 03834 420 5903 Fax.: (+49) 03834 420 5002
contact emaildbecher@uni-greifswald.de
lab head
Minia Antelo
contact affiliationInstitute of Microbiology University of Greifswald
contact emailminia.antelovarela@uni-greifswald.de
dataset submitter
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Dataset FTP location
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PRIDE project URI
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