PXD016122-1

PXD016122 is an original dataset announced via ProteomeXchange.

Title	Influenza virus infection leads to global proteome remodeling of Streptococcus pneumoniae
Description	Our understanding of the synergism between S. pneumoniae and influenza virus remains incomplete. The classic dogma has been that influenza attenuates the host innate immunity and increase the susceptibility to subsequent bacterial infection. Therefore, the majority of current studies have been focusing on the interaction of S. pneumoniae and influenza in the context of host cells. By contrast, in this study, we set out to investigate the response of pneumococcus alone to virus infection. Our hypothesis was that prior to causing any damages to host cells, influenza may have induced (lethal) changes to pneumococcus cell itself. Indeed, a very recent evidence has shown that direct viral treatment to pneumococcus will increase its adhesion to macrophage cells. Here, using quantitative shotgun approach, we attempt to investigate the proteomic alterations of S. pneumoniae by influenza virus challenge, and provide a landscape of interactions between the IAV and pneumococcus.
HostingRepository	PRIDE
AnnounceDate	2022-12-09
AnnouncementXML	Submission_2022-12-08_18:11:35.161.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	YanbaoYu
SpeciesList	scientific name: Streptococcus pneumoniae TIGR4; NCBI TaxID: 170187;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-11-04 02:12:29	ID requested
⏵ 1	2022-12-08 18:11:35	announced
2	2024-10-22 05:41:21	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: Influenza virus

proteome

remodeling;Streptococcus pneumoniae

YanbaoYu
contact affiliation	J. Craig Venter Institute, Rockville, MD 20850
contact email	yayu@jcvi.org
lab head
YanbaoYu
contact affiliation	University of Delaware
contact email	yayu@jcvi.org
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/12/PXD016122

PRIDE project URI

• PRIDE
  1. PXD016122
     1. Label: PRIDE project
     2. Name: Influenza virus infection leads to global proteome remodeling of Streptococcus pneumoniae