PXD015903-2
PXD015903 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | CPTAC, TCGA Cancer Proteome Study of Ovarian Tissue |
| Description | Explore This Study at the NCI Proteomic Data Commons Global proteome data have been acquired for 174 TCGA ovarian cancer tumor samples by 2 Proteome Characterization Centers (PCCs), Pacific Northwest National Laboratory (PNNL) and Johns Hopkins University (JHU). Both PCCs used iTRAQ (isobaric Tags for Relative and Absolute Quantification) protein quantification methods. Thirty-two of the 174 TCGA tumor samples were assayed at both sites yielding a total of 206 proteome characterizations. Glycoproteome (122 tumors) and phosphoproteome (69 tumors) analyses were also conducted, at JHU and PNNL respectively. Information on the complete TCGA Ovarian Serous Cystadenocarcinoma (OV) cohort can be found here. The Cancer Genome Atlas Research Network published on the Genomic characterization of the OV cohort in Nature on June 30, 2011 Genomic data for the 174 TCGA samples used in the CPTAC Proteome study can be downloaded from here.
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| HostingRepository | MassIVE |
| AnnounceDate | 2019-10-25 |
| AnnouncementXML | Submission_2019-10-25_08:23:10.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Christopher Kinsinger |
| SpeciesList | scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; |
| ModificationList | Carbamidomethyl; Oxidation; Deamidated; Glu->pyro-Glu; Gln->pyro-Glu; Phospho; iTRAQ4plex |
| Instrument | LTQ Orbitrap Velos; Q Exactive |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2019-10-18 08:57:04 | ID requested | |
| 1 | 2019-10-23 17:39:52 | announced | |
| ⏵ 2 | 2019-10-25 08:23:10 | announced | 2016-10-25: Updating description |
Publication List
| no publication |
Keyword List
| submitter keyword: CPTAC |
Contact List
| Hui Zhang | |
|---|---|
| contact affiliation | Department of Pathology, School of Medicine, Johns Hopkins University |
| contact email | huizhang@jhu.edu |
| lab head | |
| Richard Smith | |
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | dick.smith@pnnl.gov |
| lab head | |
| Christopher Kinsinger | |
| contact affiliation | NIH/NCI |
| contact email | Christopher.kinsinger@nih.gov |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000084252/ |
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