PXD015900-1

PXD015900 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Optimal Cutting Temperature Embedding Media Study
Description	The goal of the Optimal Cutting Temperature (OCT) Embedding Media Study was to measure the effect of OCT embedding on peptide identification. One OCT embedded sample and one snap frozen sample were compared. Each sample was analyzed 3 times using label free proteomic profiling. The data sets below contain the raw data files for the 3 replicates, there were 15 fractions assayed per sample for a total of 45 raw data files. No effect has been identified thus far, so concern over OCT embedding of the TCGA samples has been diminished. Dataset imported into MassIVE from https://cptac-data-portal.georgetown.edu/cptac/s/S014 on 11/02/18
HostingRepository	MassIVE
AnnounceDate	2024-04-09
AnnouncementXML	Submission_2024-04-09_10:08:39.264.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Xu Zhang
SpeciesList	scientific name: Mus musculus; common name: house mouse; NCBI TaxID: 10090; scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606;
ModificationList	unknown modification
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-10-18 08:52:45	ID requested
⏵ 1	2024-04-09 10:08:39	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: CPTAC

submitter keyword: CPTAC

Contact List

Daniel C Liebler
contact affiliation	Vanderbilt University
contact email	daniel.liebler@Vanderbilt.Edu
lab head
Xu Zhang
contact affiliation	NIH/NCI
contact email	xu.zhang@nih.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v02/MSV000083095/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v02/MSV000083095/