PXD014966-1

PXD014966 is an original dataset announced via ProteomeXchange.

Title	Quantitative and dynamic catalogs of proteins released during apoptotic and necroptotic cell death
Description	The inflammatory functions of the cytokine tumor necrosis factor (TNF) rely on its ability to induce cytokine production and to induce cell death. Caspase dependent and independent pathways – apoptosis and necroptosis – respectively, regulate immunogenicity by the release of distinct sets of cellular proteins. To obtain an unbiased, systems-level understanding of this important process, we here applied mass spectrometry-based proteomics to dissect protein release during apoptosis and necroptosis. We report hundreds of proteins released from human myeloid cells in time-course experiments. Both cell death types induce receptor shedding, but only apoptotic cells released nucleosome components. Conversely, necroptotic cells release lysosomal components by activating lysosomal exocytosis at early stages of necroptosis- induced membrane permeabilisation and show reduced release of conventionally secreted cytokines.
HostingRepository	PRIDE
AnnounceDate	2020-07-18
AnnouncementXML	Submission_2020-07-17_19:14:29.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Mario Oroshi
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive; LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2019-08-09 01:21:59	ID requested
⏵ 1	2020-07-17 19:14:30	announced
2	2024-10-22 05:09:21	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

curator keyword: Biological

submitter keyword: necroptosis, apoptosis, cytokine release, TNF, lysosomal exocytosis, receptor shedding

Felix Meissner
contact affiliation	Experimental Systems Immunology, Max Planck Institute of Biochemistry, Martinsried, Germany
contact email	Meissner@biochem.mpg.de
lab head
Mario Oroshi
contact affiliation	Proteomics
contact email	oroshi@biochem.mpg.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/07/PXD014966

PRIDE project URI

• PRIDE
  1. PXD014966
     1. Label: PRIDE project
     2. Name: Quantitative and dynamic catalogs of proteins released during apoptotic and necroptotic cell death