PXD014835-1

PXD014835 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	CPTAC, TCGA Colorectal Cancer Proteome Study Comparison and Reference Samples (CompRef)
Description	Comparison and Reference (CompRef) Samples, initially characterized in the System Suitability Study, were analyzed along with the TCGA colorectal cancer tumor samples and with the normal colon epithelium samples. These interstitial CompRef experiments are global proteomic profiling of the P6 (luminal) and P5 (basal) human-in-mouse xenograft breast carcinoma pooled samples. One CompRef sample was run after every 5 samples of TCGA colorectal cancer tumor tissue, alternating between the P6 and P5 CompRef samples to generate 20 total data sets (designated as 01CompRef_P6_VU through 20CompRef_P5_VU). Twelve CompRef samples were run with the 30 normal colon epithelium samples to produce 12 data sets (designated as 21CompRef_P6_VU through 32CompRef_P5_VU). These experiments were used to monitor the consistency of laboratory protocols and mass spectrometry instrument performance during the TCGA colorectal cancer analysis. Dataset imported into MassIVE from https://cptac-data-portal.georgetown.edu/cptac/s/S017 on 08/31/18
HostingRepository	MassIVE
AnnounceDate	2020-01-23
AnnouncementXML	Submission_2020-01-23_16:40:10.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Christopher Kinsinger
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; scientific name: Mus musculus; common name: house mouse; NCBI TaxID: 10090;
ModificationList	Carbamidomethyl; Oxidation; Deamidated; Glu->pyro-Glu; Gln->pyro-Glu
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-07-30 22:53:17	ID requested
⏵ 1	2020-01-23 16:40:11	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: CPTAC

submitter keyword: CPTAC

Contact List

Daniel C Liebler
contact affiliation	Vanderbilt University
contact email	daniel.liebler@Vanderbilt.Edu
lab head
Christopher Kinsinger
contact affiliation	NIH/NCI
contact email	Christopher.kinsinger@nih.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000082875/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000082875/