PXD014351 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Biogenesis and DNA cargo of Dinoroseobacter shibae outer membrane vesicles suggests vesicle formation is coupled to replication |
Description | The Gram-negative photoheterotrophic bacterium Dinoroseobacter shibae is a member of the high abundant marine Roseobacter group. In the ocean, OMVs have about the same abundance as bacteria, a distinct depth distribution, and contain DNA from a variety of marine bacterial taxa. In the present study, we determined the abundance, size, and ultrastructure of membrane vesicles of D. shibae and analysed the protein inventory of the soluble and membrane fractions of cells and vesicles in order to study the origin of OMV membranes and content. The proteomic analyses were complemented by fatty acid analyses. |
HostingRepository | PRIDE |
AnnounceDate | 2020-12-16 |
AnnouncementXML | Submission_2020-12-15_22:26:59.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Martin Kucklick |
SpeciesList | scientific name: Dinoroseobacter shibae DFL 12 = DSM 16493; NCBI TaxID: 398580; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-06-24 02:37:53 | ID requested | |
⏵ 1 | 2020-12-15 22:27:00 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Dinoroseobacter shibae, outer membrane vesicles (OMVs), GeLC-MS/MS |
Contact List
Susanne Engelmann |
contact affiliation | Mikrobielle Proteomik, Helmholtzzentrum für Infektionsforschung, Braunschweig, Germany Institut für Mikrobiologie, Technische Universität Braunschweig, Germany |
contact email | Susanne.Engelmann@helmholtz-hzi.de |
lab head | |
Martin Kucklick |
contact affiliation | TU Braunschweig Institut für Mikrobiologie Spielmannstr. 7 Germany |
contact email | m.kucklick@tu-braunschweig.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD014351
- Label: PRIDE project
- Name: Biogenesis and DNA cargo of Dinoroseobacter shibae outer membrane vesicles suggests vesicle formation is coupled to replication