PXD013800-1

PXD013800 is an original dataset announced via ProteomeXchange.

Title	LARGE2 mediates O-glycosylation in HT-29 colorectal cancer cells
Description	The O-glycosyltransferase LARGE2 attaches a laminin-binding matriglycan structure on alpha-Dystroglycan (α-DG) to mediate the interaction of different cell types with their laminin-containing basement membrane. We used HT-29 CRC cells, characterized by low endogenous LARGE2 gene expression, to ectopically express LARGE2 and to drive O glycosylation of its protein substrates. Immunoblot analyses had revealed that the addition of matriglycan-structures on LARGE2 substrate proteins substantially increased their molecular weight (MW). In order to take into account this shift in MW of candidate proteins, glycoprotein-enriched fractions from HT-29 cells with or without ectopic LARGE2 expression were separated by gel electrophoresis and subsequently fractionated in 6 different molecular weight windows (kDa: 0-25, 25-55, 55-75, 75-110, 110-160, 160<). Subsequently, samples were prepared for quantitative mass spectrometry analysis (qLC-MS/MS) analysis according to standard procedures. qLC-MS-MS analysis identified α-DG–related peptides within higher MW protein fractions only when LARGE2 was overexpressed. HT-29 cell secreted Laminin-2 was exclusively detected together with these high MW forms of α-DG, which demonstrated the affinity of Laminin towards the LARGE2-synthesized matriglycan structure on α-DG. Additional candidate proteins identified in this study need further experimental confirmation. Overall, we show that size fractionation after gel electrophoresis followed by quantitative mass spectrometry, performed separately on different MW windows, represents an elegant approach to reveal potential substrates of the O-glycosyltransferase LARGE2.
HostingRepository	PRIDE
AnnounceDate	2020-06-28
AnnouncementXML	Submission_2020-06-27_16:42:49.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Svenja Wiechmann
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	O-glycosylated residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2019-05-10 09:07:02	ID requested
⏵ 1	2020-06-27 16:42:49	announced
2	2024-10-22 05:07:49	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: Human, O-glycosylation, colorectal cancer

Bernhard Kuster
contact affiliation	Proteomics and Bioanalytics, Technical University of Munich, Germany
contact email	kuster@tum.de
lab head
Svenja Wiechmann
contact affiliation	TU Munich, Proteomics and Bioanalytics
contact email	svenja.wiechmann@tum.de
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD013800
     1. Label: PRIDE project
     2. Name: LARGE2 mediates O-glycosylation in HT-29 colorectal cancer cells