PXD013436-1

PXD013436 is an original dataset announced via ProteomeXchange.

Title	Label-Free Quantiative Analysis of Sepioloidea lineolata
Description	Sepioloidea lineolata, the striped pyjama squid (family Sepidariidae), is a small species of benthic squid distributed along the Southern Indo-Pacfic coast of Australia. All Sepiadariid squids are known to secrete large volumes of viscous slime when stressed. The proteome of the slime, dorsal and ventral mantle muscle, the dorsal and ventral mantle epithelium and ventral mantle glands was analysed by combining label-free quantitative analysis using high resolution mass spectrometry data with an S. lineolata transcriptome assembled from give tissues including slime. A total of 28 highly positively differentially expressed proteins were identified within the slime and were predominately comprised of a host of enzymes including peptidases and protease inhibitors. Seven of these proteins contained predicted signal peptides, indicating classical secretion, with four proteins having no identifiable domains or similarity to any known proteins.
HostingRepository	PRIDE
AnnounceDate	2020-03-02
AnnouncementXML	Submission_2020-03-02_01:37:52.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Nikeisha Caruana
SpeciesList	scientific name: Sepioloidea lineolata; NCBI TaxID: 61742;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2019-04-10 03:24:22	ID requested
⏵ 1	2020-03-02 01:37:54	announced

Caruana NJ, Strugnell JM, Finn J, Faou P, Plummer KM, Cooke IR, ). J Proteome Res, 19(4):1491-1501(2020) [pubmed]

submitter keyword: : Slime, squid, cephalopod, differential expression, label-free quantitation, gland, secretion

Associate Professor Jan Strugnell
contact affiliation	Associate Professor Jan Strugnell Director, Centre for Sustainable Tropical Fisheries and Aquaculture, and Marine Biology and Aquaculture College of Science and Engineering, James Cook University, Townsville, 4811 QLD, Australia
contact email	jan.strugnell@jcu.edu.au
lab head
Nikeisha Caruana
contact affiliation	La Trobe University
contact email	njcaruana@students.latrobe.edu.au
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD013436

PRIDE project URI

• PRIDE
  1. PXD013436
     1. Label: PRIDE project
     2. Name: Label-Free Quantiative Analysis of Sepioloidea lineolata