PXD013343 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Simple targeted assays for metabolic pathways and signaling: a powerful tool for targeted proteomics |
Description | We introduce STAMPS, a pathway centric web service for the development of targeted proteomics assays. STAMPS guides the user by providing several intuitive interfaces for a rapid and simplified method design. Applying our curated framework to signaling and metabolic pathways, we reduced average assay development time by a factor of ~150 and revealed that the insulin signaling is actively controlled by protein abundance changes in insulin sensitive and resistance states. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-07 |
AnnouncementXML | Submission_2024-10-07_13:29:40.080.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD013343 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Andreas Hentschel |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; |
ModificationList | Ammonia-loss; Gln->pyro-Glu; Glu->pyro-Glu; Oxidation; Carbamidomethyl; Acetyl |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-04-02 07:23:20 | ID requested | |
⏵ 1 | 2024-10-07 13:29:45 | announced | |
Publication List
Kopczynski D, Hentschel A, Coman C, Schebb NH, Hornemann T, Mashek DG, Hartung NM, Shevchuk O, Sch, ö, tt HF, Lorenz K, Torta F, Burla B, Zahedi RP, Sickmann A, Kreutz MR, Ejsing CS, Medenbach J, Ahrends R, Simple Targeted Assays for Metabolic Pathways and Signaling: A Powerful Tool for Targeted Proteomics. Anal Chem, 92(20):13672-13676(2020) [pubmed] |
10.1021/acs.analchem.0c02793; |
Keyword List
curator keyword: Technical |
submitter keyword: Databases,Proteomics, Mass spectrometry, Proteomic analysis |
Contact List
Albert Sickmann |
contact affiliation | ISAS, Dortmund, Germany |
contact email | albert.sickmann@isas.de |
lab head | |
Andreas Hentschel |
contact affiliation | Leibniz Institut für Analytische Wissenschaften |
contact email | andreas.hentschel@isas.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/03/PXD013343 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD013343
- Label: PRIDE project
- Name: Simple targeted assays for metabolic pathways and signaling: a powerful tool for targeted proteomics