PXD013164-2

PXD013164 is an original dataset announced via ProteomeXchange.

Title	Ultrasonic-based OCT-removal from solid tumor biopsies.
Description	A new method for proteomic studies of OCT-embedded samples based on ultrasound energy is proposed. The cleaning of OCT from mouse kidney embedded tissues were evaluated through the aid of ultrasound energy, with two different frequencies. Simultaneously, vortex agitation was used as control. The optimized method obtained was then applied in human tumor kidney biopsies including chromophobe renal cell carcinomas (chRCC) and renal oncocytomas (RO).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:06:52.089.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Hugo M. Santos
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; acetylated residue
Instrument	impact HD

Revision	Datetime	Status	ChangeLog Entry
0	2019-03-20 08:26:40	ID requested
1	2019-06-13 06:07:56	announced
⏵ 2	2024-10-22 04:06:55	announced	2024-10-22: Updated project metadata.

10.1021/acs.jproteome.9b00248;

Jorge S, Capelo JL, LaFramboise W, Dhir R, Lodeiro C, Santos HM, Development of a Robust Ultrasonic-Based Sample Treatment To Unravel the Proteome of OCT-Embedded Solid Tumor Biopsies. J Proteome Res, 18(7):2979-2986(2019) [pubmed]

submitter keyword: OCT-embedded samples, Ultrasound energy, Renal Oncocytoma, Mass Spectrometry., Chromophobe Renal Cell Carcinoma, Sample treatment

Hugo M. Santos
contact affiliation	Faculty of sciences, Universidade NOVA de Lisboa
contact email	hmsantos@fct.unl.pt
lab head
Hugo M. Santos
contact affiliation	LAQV-REQUIMTE, Department of Chemistry, School of Science and Technology, NOVA University of Lisbon
contact email	hmsantos@fct.unl.pt
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013164

PRIDE project URI

• PRIDE
  1. PXD013164
     1. Label: PRIDE project
     2. Name: Ultrasonic-based OCT-removal from solid tumor biopsies.